40% off first order40% Off Your First Order — applied automatically at checkout

Log in
Tom&Sawyer
Shop
Meet the ExpertsBlog
Build a plan

Is Your Dog Hounded By Bad Bacteria?

November 11, 2025 · Updated January 6, 2026

Original article by Dr. Joe Inglis, BVSc, MRCVS*. Edited for blog publication by Kelly Gredner, RVT, VTS (Nutrition)

Did you know that your dog is basically made of bugs?

OK, that’s not exactly true, but scientists estimate that the average dog’s body contains around the same number of microbial cells as it does dog cells — and most of these are concentrated in their digestive system where they play an essential role in the digestion of food , and also contribute to a wide range of other important bodily functions.

Tom&Sawyer — Is Your Dog Hounded By Bad Bacteria?

The community of these organisms that live within the digestive tract, or gut, are known as the gut microbiome. And there are literally trillions of them.

Most of the bacteria in the gut are completely harmless - with many being classified as ‘good’ bacteria which are involved in aiding digestion, boosting immune system health, or supporting brain health.

There are less welcome bugs in the mix as well, with many species of ‘bad’ or disease-causing / pathogenic bacteria usually present, but if these are balanced out with ‘good’ bacteria they don't usually cause active disease.

There are also bacteria that are known as opportunistic pathogens - this means that most of the time they are harmless, but if they get the opportunity then they become pathogenic. This means that your dog's body is performing a continuous balancing act within the gut microbiome to ensure that these ‘bad’ bacteria don't start to dominate and overwhelm the ‘good’ bugs.

The gut microbiome is involved in lots of essential processes for health, including:

Helping to digest food

Manufacturing vitamins (like vitamins B12 & K)

Transforming fiber into short chain fatty acids (food for the gut lining)

and many more!

Some of the compounds the bacteria produce are essential for health but cannot be produced by the body itself, so dogs (and ourselves) depend upon the ‘good’ bacteria to produce them. In addition, the canine microbiome has an essential role in the dog’s immune system and overall health; it can educate the immune system, protect against pathogens, and through these, and its metabolic actions, it directly or indirectly affects most physiological functions.

There are lots of factors that can influence the health of your dog’s microbiome, from their diet and lifestyle to their age and social lives - but the biggest impact often comes from diseases, particularly those affecting the digestive system such as gastroenteritis leading to inflammation of the gut wall. Digestive disorders can lead to changes in the balance of bacteria in the gut, known as dysbiosis, which can then lead to secondary health problems linked to the products that the gut microbes produce.

And it's not just the disorders themselves that can cause problems - the treatments that vets often prescribed, such as antibiotics, can also have negative effects on the microbiome, leading to a vicious cycle of ever worsening gut diseases such as colitis, inflammatory bowel disease and ulcerative colitis. On the other hand, a stable, balanced microbiome, undisturbed by antibiotics, supports a normal inflammatory response, while also helping the immune system to respond appropriately to infections.

Tom&Sawyer — Is Your Dog Hounded By Bad Bacteria?
Tom&Sawyer — Is Your Dog Hounded By Bad Bacteria?

Despite all the unknowns surrounding canine microbiome science, it is clear that the microbes in our dogs’ tummies hold many of the keys to health and well-being, and by analyzing them we can potentially transform the future of pet healthcare!

*Originally published in Cotswold Life, this article by Dr. Joe Inglis, a UK-based Veterinarian and expert in animal nutrition, has been republished here, with minor edits, with the author’s express permission.

More from the journal

  • Can Dogs Eat Sweet Potatoes? The Powerful Superfood Your Dog Might Already LoveSweet potatoes show up in a lot of high-quality pet nutrition for good reason. Can dogs eat sweet potatoes? Yes, and we'd go further than that. Sweet potatoes are one of the most nutrient-dense, digestible, and well-tolerated whole-food ingredients you can put in a dog's bowl.
  • National Kitten Day: What Early Cat Meals Can Teach Us About Building Better Feeding HabitsNational Kitten Day on July 10 is one of those moments that invites a bigger conversation. It's not only about celebrating how small and determined kittens are. It's about what we choose to feed them from the very start, and what those early choices set in motion.
  • What We See in Summer Bowls: How Hydration Changes the Way Dogs and Cats Eat in JulyJuly is National Pet Hydration Awareness Month, and if you pay close attention to your pet's bowl during the warmer months, something shifts. Dogs get slower about finishing their meals. Cats grow even more selective than usual. These changes aren't random. They reflect how summer heat affects appetite and fluid balance in ways that go well beyond simply needing more water.
Tom&Sawyer
  • Facebook
  • Instagram
  • TikTok
  • YouTube
  • Pinterest
Get started
  • Shop
Why Tom&Sawyer?
  • Our Standards
  • Science & Research
  • Our Story
  • Giving Back
  • Meet the Experts
  • Reviews
Explore
  • Blog
  • FAQ
  • Contact Us
  • Account
Join the pack

Get access to the latest updates in pet health and wellness, exclusive offers, and more!

Tom&Sawyer
  • Facebook
  • Instagram
  • TikTok
  • YouTube
  • Pinterest
Get started
Why Tom&Sawyer?
  • Our Standards
  • Science & Research
  • Our Story
  • Giving Back
  • Meet the Experts
  • Reviews
Explore
  • Blog
  • FAQ
  • Contact Us
  • Account
Join the pack

Get access to the latest updates in pet health and wellness, exclusive offers, and more!

© 2026 All rights reserved.
Shipping & ReturnsTerms of SaleTerms of ServicePrivacy Policy
Build my pet's plan

A lot is still not fully understood about the microbiome, and we are learning new things about it all the time. For example, we are starting to appreciate the importance of how a dog’s diet is prepared to the health of their gut microbiomes, with significant differences in the microbiome of dogs fed dry foods versus those fed fresh cooked or raw diets.

To feed the gut, give it fresh food! At Tom&Sawyer our recipes are filled with ingredients that fuel the gut. From Turkey Gobbler filled with antioxidants from kale, cranberries, and butternut squash, to Goji Berry Beef that packs a punch with goji berries, blackberries and blueberries. Shop our menu to feed your pup (and their gut) !